J3_4WWW_010

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

4WWW|1|RA|U|686, 4WWW|1|RA|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WWW_010 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0584

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4WWW|1|RA|U|683
4WWW|1|RA|G|684
4WWW|1|RA|A|685
4WWW|1|RA|U|686
4WWW|1|RA|C|687
4WWW|1|RA|U|688
4WWW|1|RA|A|689
*
4WWW|1|RA|U|773
4WWW|1|RA|G|774
4WWW|1|RA|G|775
*
4WWW|1|RA|C|791
4WWW|1|RA|A|792
4WWW|1|RA|A|793
4WWW|1|RA|A|794

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R2

50S ribosomal protein L34

Chain RC

50S ribosomal protein L2