J3_4WWW_011

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WWW_011 not in the Motif Atlas

Homologous match to J3_5J7L_039

Geometric discrepancy: 0.0571

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

4WWW|1|RA|C|698
4WWW|1|RA|A|699
4WWW|1|RA|G|700
*
4WWW|1|RA|C|732
4WWW|1|RA|G|733
4WWW|1|RA|A|734
4WWW|1|RA|A|735
4WWW|1|RA|C|736
*
4WWW|1|RA|G|760
4WWW|1|RA|A|761
4WWW|1|RA|U|762
4WWW|1|RA|G|763

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RC

50S ribosomal protein L2