J3_4WWW_021

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WWW_021 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0871

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

4WWW|1|XA|C|936
4WWW|1|XA|A|937
4WWW|1|XA|A|938
4WWW|1|XA|G|939
*
4WWW|1|XA|C|1344
4WWW|1|XA|U|1345
4WWW|1|XA|A|1346
4WWW|1|XA|G|1347
4WWW|1|XA|U|1348
4WWW|1|XA|A|1349
4WWW|1|XA|A|1350
*
4WWW|1|XA|U|1372
4WWW|1|XA|G|1373
4WWW|1|XA|A|1374
4WWW|1|XA|A|1375
4WWW|1|XA|U|1376
4WWW|1|XA|A|1377
4WWW|1|XA|C|1378
4WWW|1|XA|G|1379

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XG

30S ribosomal protein S7

Chain XI

30S ribosomal protein S9