J3_4WWW_038

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCCGUAGCG*UAGCGC*GGAAC

Length

20 nucleotides

Bulged bases

4WWW|1|YB|U|14

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WWW|1|YB|G|10
4WWW|1|YB|C|11
4WWW|1|YB|C|12
4WWW|1|YB|G|13
4WWW|1|YB|U|14
4WWW|1|YB|A|15
4WWW|1|YB|G|16
4WWW|1|YB|C|17
4WWW|1|YB|G|18
*
4WWW|1|YB|U|65
4WWW|1|YB|A|66
4WWW|1|YB|G|67
4WWW|1|YB|C|68
4WWW|1|YB|G|69
4WWW|1|YB|C|70
*
4WWW|1|YB|G|106
4WWW|1|YB|G|107
4WWW|1|YB|A|108
4WWW|1|YB|A|109
4WWW|1|YB|C|110

Current chains

Chain YB

5S rRNA

Nearby chains

Chain YA

Large subunit ribosomal RNA; LSU rRNA

Chain YO

50S ribosomal protein L18

Chain YW

50S ribosomal protein L27