J3_4WWW_064

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4WWW|1|XA|U|1212, 4WWW|1|XA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WWW_064 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.2122

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4WWW|1|XA|C|990
4WWW|1|XA|U|991
4WWW|1|XA|U|992
4WWW|1|XA|G|993
4WWW|1|XA|A|994
4WWW|1|XA|C|995
4WWW|1|XA|A|996
4WWW|1|XA|U|997
*
4WWW|1|XA|A|1044
4WWW|1|XA|C|1045
4WWW|1|XA|A|1046
4WWW|1|XA|G|1047
*
4WWW|1|XA|C|1210
4WWW|1|XA|U|1211
4WWW|1|XA|U|1212
4WWW|1|XA|A|1213
4WWW|1|XA|C|1214
4WWW|1|XA|G|1215

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XN

30S ribosomal protein S14