J3_4WWW_077
3D structure
- PDB id
- 4WWW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to CEM-101
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GCCGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 4WWW|1|YB|C|12, 4WWW|1|YB|U|14, 4WWW|1|YB|A|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4WWW_077 not in the Motif Atlas
- Homologous match to J3_5J7L_049
- Geometric discrepancy: 0.2227
- The information below is about J3_5J7L_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89095.1
- Basepair signature
- cWW-F-F-F-tHS-F-cWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
4WWW|1|YB|G|10
4WWW|1|YB|C|11
4WWW|1|YB|C|12
4WWW|1|YB|G|13
4WWW|1|YB|U|14
4WWW|1|YB|A|15
4WWW|1|YB|G|16
*
4WWW|1|YB|C|68
4WWW|1|YB|G|69
4WWW|1|YB|C|70
*
4WWW|1|YB|G|106
4WWW|1|YB|G|107
4WWW|1|YB|A|108
4WWW|1|YB|A|109
4WWW|1|YB|C|110
Current chains
- Chain YB
- 5S rRNA
Nearby chains
- Chain YA
- Large subunit ribosomal RNA; LSU rRNA
- Chain YO
- 50S ribosomal protein L18
- Chain YW
- 50S ribosomal protein L27
Coloring options: