J3_4WZD_036
3D structure
- PDB id
- 4WZD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with cognate tRNA-Tyr in the P-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GCCUAAG*UAGGAAUCU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 4WZD|1|13|C|48||||P_1, 4WZD|1|13|A|50||||P_1, 4WZD|1|13|A|51||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4WZD_036 not in the Motif Atlas
- Homologous match to J3_4LFB_014
- Geometric discrepancy: 0.072
- The information below is about J3_4LFB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4WZD|1|13|G|46||||P_1
4WZD|1|13|C|47||||P_1
4WZD|1|13|C|48||||P_1
4WZD|1|13|U|49||||P_1
4WZD|1|13|A|50||||P_1
4WZD|1|13|A|51||||P_1
4WZD|1|13|G|52||||P_1
*
4WZD|1|13|U|359||||P_1
4WZD|1|13|A|360||||P_1
4WZD|1|13|G|361||||P_1
4WZD|1|13|G|362||||P_1
4WZD|1|13|A|363||||P_1
4WZD|1|13|A|364||||P_1
4WZD|1|13|U|365||||P_1
4WZD|1|13|C|366||||P_1
4WZD|1|13|U|367||||P_1
*
4WZD|1|13|A|393||||P_1
4WZD|1|13|G|394||||P_1
4WZD|1|13|C|395||||P_1
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 3I
- 30S ribosomal protein S12
- Chain 69
- 50S ribosomal protein L9
- Chain 7I
- 30S ribosomal protein S16
Coloring options: