J3_4WZD_042
3D structure
- PDB id
- 4WZD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with cognate tRNA-Tyr in the P-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
- Length
- 28 nucleotides
- Bulged bases
- 4WZD|1|14|U|504||||P_1, 4WZD|1|14|G|508||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4WZD_042 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.0569
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
4WZD|1|14|G|30||||P_1
4WZD|1|14|C|31||||P_1
*
4WZD|1|14|G|474||||P_1
4WZD|1|14|U|475||||P_1
4WZD|1|14|G|476||||P_1
4WZD|1|14|A|477||||P_1
4WZD|1|14|A|478||||P_1
4WZD|1|14|A|479||||P_1
4WZD|1|14|A|480||||P_1
4WZD|1|14|G|481||||P_1
4WZD|1|14|A|482||||P_1
4WZD|1|14|A|483||||P_1
4WZD|1|14|C|484||||P_1
*
4WZD|1|14|G|496||||P_1
4WZD|1|14|A|497||||P_1
4WZD|1|14|G|498||||P_1
4WZD|1|14|U|499||||P_1
4WZD|1|14|G|500||||P_1
4WZD|1|14|A|501||||P_1
4WZD|1|14|A|502||||P_1
4WZD|1|14|A|503||||P_1
4WZD|1|14|U|504||||P_1
4WZD|1|14|A|505||||P_1
4WZD|1|14|G|506||||P_1
4WZD|1|14|A|507||||P_1
4WZD|1|14|G|508||||P_1
4WZD|1|14|C|509||||P_1
4WZD|1|14|C|510||||P_1
Current chains
- Chain 14
- 23S ribosomal RNA
Nearby chains
- Chain 85
- 50S ribosomal protein L20
- Chain A5
- 50S ribosomal protein L22
- Chain C5
- 50S ribosomal protein L24
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