J3_4WZD_043
3D structure
- PDB id
- 4WZD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with cognate tRNA-Tyr in the P-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUCG*CGAUAGCGCACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 4WZD|1|14|C|34||||P_1, 4WZD|1|14|U|448||||P_1, 4WZD|1|14|C|456||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4WZD_043 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.064
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
4WZD|1|14|C|32||||P_1
4WZD|1|14|U|33||||P_1
4WZD|1|14|C|34||||P_1
4WZD|1|14|G|35||||P_1
*
4WZD|1|14|C|445||||P_1
4WZD|1|14|G|446||||P_1
4WZD|1|14|A|447||||P_1
4WZD|1|14|U|448||||P_1
4WZD|1|14|A|449||||P_1
4WZD|1|14|G|450||||P_1
4WZD|1|14|C|451||||P_1
4WZD|1|14|G|452||||P_1
4WZD|1|14|C|453||||P_1
4WZD|1|14|A|454||||P_1
4WZD|1|14|C|455||||P_1
4WZD|1|14|C|456||||P_1
4WZD|1|14|A|457||||P_1
4WZD|1|14|G|458||||P_1
4WZD|1|14|U|459||||P_1
4WZD|1|14|A|460||||P_1
4WZD|1|14|C|461||||P_1
*
4WZD|1|14|G|468||||P_1
4WZD|1|14|G|469||||P_1
4WZD|1|14|A|470||||P_1
4WZD|1|14|A|471||||P_1
4WZD|1|14|A|472||||P_1
4WZD|1|14|G|473||||P_1
Current chains
- Chain 14
- 23S ribosomal RNA
Nearby chains
- Chain 39
- 50S ribosomal protein L4
- Chain 85
- 50S ribosomal protein L20
- Chain B5
- 50S ribosomal protein L23
- Chain L5
- 50S ribosomal protein L34
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