J3_4WZD_051
3D structure
- PDB id
- 4WZD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with cognate tRNA-Tyr in the P-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CCAUAG*CG*UCG
- Length
- 11 nucleotides
- Bulged bases
- 4WZD|1|16|U|14||||P_1, 4WZD|1|16|C|108||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4WZD_051 not in the Motif Atlas
- Homologous match to J3_9DFE_020
- Geometric discrepancy: 0.1748
- The information below is about J3_9DFE_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_12003.2
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
4WZD|1|16|C|11||||P_1
4WZD|1|16|C|12||||P_1
4WZD|1|16|A|13||||P_1
4WZD|1|16|U|14||||P_1
4WZD|1|16|A|15||||P_1
4WZD|1|16|G|16||||P_1
*
4WZD|1|16|C|68||||P_1
4WZD|1|16|G|69||||P_1
*
4WZD|1|16|U|107||||P_1
4WZD|1|16|C|108||||P_1
4WZD|1|16|G|109||||P_1
Current chains
- Chain 16
- 5S ribosomal RNA
Nearby chains
- Chain 1H
- Large subunit ribosomal RNA; LSU rRNA
- Chain A8
- 50S ribosomal protein L18
- Chain H8
- 50S ribosomal protein L25
- Chain I8
- 50S ribosomal protein L27
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