J3_4XEJ_009

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

4XEJ|1|A23S|G|686, 4XEJ|1|A23S|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4XEJ_009 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.1125

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.1

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

10

Unit IDs

4XEJ|1|A23S|C|683
4XEJ|1|A23S|G|684
4XEJ|1|A23S|A|685
4XEJ|1|A23S|G|686
4XEJ|1|A23S|C|687
4XEJ|1|A23S|U|688
4XEJ|1|A23S|A|689
*
4XEJ|1|A23S|U|773
4XEJ|1|A23S|A|774
4XEJ|1|A23S|G|775
*
4XEJ|1|A23S|C|791
4XEJ|1|A23S|G|792
4XEJ|1|A23S|A|793
4XEJ|1|A23S|G|794

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain AL02

50S ribosomal protein L2

Chain AL34

50S ribosomal protein L34