J3_4XEJ_028

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4XEJ_028 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0968

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

4XEJ|1|B23S|C|698
4XEJ|1|B23S|A|699
4XEJ|1|B23S|G|700
*
4XEJ|1|B23S|C|732
4XEJ|1|B23S|G|733
4XEJ|1|B23S|A|734
4XEJ|1|B23S|A|735
4XEJ|1|B23S|C|736
*
4XEJ|1|B23S|G|760
4XEJ|1|B23S|A|761
4XEJ|1|B23S|U|762
4XEJ|1|B23S|G|763

Current chains

Chain B23S

23S ribosomal RNA

Nearby chains

Chain BL02

50S ribosomal protein L2

Chain BL34

50S ribosomal protein L34