J3_4XEJ_032
3D structure
- PDB id
- 4XEJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- IRES bound to bacterial Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- UUG*CUAACC*GGGACAG
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4XEJ_032 not in the Motif Atlas
- Homologous match to J3_4WF9_007
- Geometric discrepancy: 0.1608
- The information below is about J3_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07703.1
- Basepair signature
- cWW-cWW-tSH-F-F-F-F-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
4XEJ|1|B23S|U|2091
4XEJ|1|B23S|U|2092
4XEJ|1|B23S|G|2093
*
4XEJ|1|B23S|C|2196
4XEJ|1|B23S|U|2197
4XEJ|1|B23S|A|2198
4XEJ|1|B23S|A|2199
4XEJ|1|B23S|C|2200
4XEJ|1|B23S|C|2201
*
4XEJ|1|B23S|G|2222
4XEJ|1|B23S|G|2223
4XEJ|1|B23S|G|2224
4XEJ|1|B23S|A|2225
4XEJ|1|B23S|C|2226
4XEJ|1|B23S|A|2227
4XEJ|1|B23S|G|2228
Current chains
- Chain B23S
- 23S ribosomal RNA
Nearby chains
- Chain AS04
- 30S ribosomal protein S4
- Chain BL02
- 50S ribosomal protein L2
- Chain BL09
- 50S ribosomal protein L9
- Chain BL28
- 50S ribosomal protein L28
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