J3_4XEJ_041

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UGCC*GGUGUU*GCAA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4XEJ|1|A16S|U|1073
4XEJ|1|A16S|G|1074
4XEJ|1|A16S|C|1075
4XEJ|1|A16S|C|1076
*
4XEJ|1|A16S|G|1081
4XEJ|1|A16S|G|1082
4XEJ|1|A16S|U|1083
4XEJ|1|A16S|G|1084
4XEJ|1|A16S|U|1085
4XEJ|1|A16S|U|1086
*
4XEJ|1|A16S|G|1099
4XEJ|1|A16S|C|1100
4XEJ|1|A16S|A|1101
4XEJ|1|A16S|A|1102

Current chains

Chain A16S

16S ribosomal RNA

Nearby chains

Chain AS02

30S ribosomal protein S2

Chain AS05

30S ribosomal protein S5