J3_4XEJ_057
3D structure
- PDB id
- 4XEJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- IRES bound to bacterial Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- CGG*CUAG*CG
- Length
- 9 nucleotides
- Bulged bases
- 4XEJ|1|B16S|A|653
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4XEJ_057 not in the Motif Atlas
- Geometric match to J3_4LFB_011
- Geometric discrepancy: 0.1827
- The information below is about J3_4LFB_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01633.1
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
4XEJ|1|B16S|C|586
4XEJ|1|B16S|G|587
4XEJ|1|B16S|G|588
*
4XEJ|1|B16S|C|651
4XEJ|1|B16S|U|652
4XEJ|1|B16S|A|653
4XEJ|1|B16S|G|654
*
4XEJ|1|B16S|C|754
4XEJ|1|B16S|G|755
Current chains
- Chain B16S
- 16S ribosomal RNA
Nearby chains
- Chain BS08
- 30S ribosomal protein S8
- Chain BS12
- 30S ribosomal protein S12
- Chain BS15
- 30S ribosomal protein S15
- Chain BS17
- 30S ribosomal protein S17
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