J3_4XEJ_077

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GCCCAUAG*CG*UCGGU

Length

15 nucleotides

Bulged bases

4XEJ|1|B5S|A|13, 4XEJ|1|B5S|U|14, 4XEJ|1|B5S|C|108

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4XEJ|1|B5S|G|9
4XEJ|1|B5S|C|10
4XEJ|1|B5S|C|11
4XEJ|1|B5S|C|12
4XEJ|1|B5S|A|13
4XEJ|1|B5S|U|14
4XEJ|1|B5S|A|15
4XEJ|1|B5S|G|16
*
4XEJ|1|B5S|C|68
4XEJ|1|B5S|G|69
*
4XEJ|1|B5S|U|107
4XEJ|1|B5S|C|108
4XEJ|1|B5S|G|109
4XEJ|1|B5S|G|110
4XEJ|1|B5S|U|111

Current chains

Chain B5S

5S ribosomal RNA

Nearby chains

Chain B23S

Large subunit ribosomal RNA; LSU rRNA

Chain BL18

50S ribosomal protein L18

Chain BL25

50S ribosomal protein L25

Chain BL27

50S ribosomal protein L27