J3_4Y4O_020

3D structure

PDB id

4Y4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.2

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

5

Unit IDs

4Y4O|1|2A|C|698
4Y4O|1|2A|A|699
4Y4O|1|2A|G|700
*
4Y4O|1|2A|C|732
4Y4O|1|2A|G|733
4Y4O|1|2A|A|734
4Y4O|1|2A|A|735
4Y4O|1|2A|C|736
*
4Y4O|1|2A|G|760
4Y4O|1|2A|A|761
4Y4O|1|2A|U|762
4Y4O|1|2A|G|763

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2