J3_4Y4O_021

3D structure

PDB id

4Y4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases (A, C, G, U)

1083U

QA status

Missing nucleotides: 1055, 1056, 1057, 1081, 1082, 1083, 1084, 1085, 1086, 1087, 1102, 1103, 1104

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4Y4O|1|2A|G|1055
4Y4O|1|2A|G|1056
4Y4O|1|2A|A|1057
*
4Y4O|1|2A|U|1081
4Y4O|1|2A|U|1082
4Y4O|1|2A|U|1083
4Y4O|1|2A|A|1084
4Y4O|1|2A|A|1085
4Y4O|1|2A|A|1086
4Y4O|1|2A|G|1087
*
4Y4O|1|2A|C|1102
4Y4O|1|2A|A|1103
4Y4O|1|2A|C|1104

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36