J3_4Y4O_028

3D structure

PDB id

4Y4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4Y4O_028 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0654

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

4Y4O|1|2a|C|936
4Y4O|1|2a|A|937
4Y4O|1|2a|A|938
4Y4O|1|2a|G|939
*
4Y4O|1|2a|C|1344
4Y4O|1|2a|U|1345
4Y4O|1|2a|A|1346
4Y4O|1|2a|G|1347
4Y4O|1|2a|U|1348
4Y4O|1|2a|A|1349
4Y4O|1|2a|A|1350
*
4Y4O|1|2a|U|1372
4Y4O|1|2a|G|1373
4Y4O|1|2a|A|1374
4Y4O|1|2a|A|1375
4Y4O|1|2a|U|1376
4Y4O|1|2a|A|1377
4Y4O|1|2a|C|1378
4Y4O|1|2a|G|1379

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2g

30S ribosomal protein S7

Chain 2i

30S ribosomal protein S9