J3_4Y4O_062
3D structure
- PDB id
- 4Y4O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- GCC*GCCUAGUGAACC*GAUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 4Y4O|1|2A|A|2388, 4Y4O|1|2A|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4Y4O_062 not in the Motif Atlas
- Homologous match to J3_9DFE_015
- Geometric discrepancy: 0.0491
- The information below is about J3_9DFE_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4Y4O|1|2A|G|2282
4Y4O|1|2A|C|2283
4Y4O|1|2A|C|2284
*
4Y4O|1|2A|G|2384
4Y4O|1|2A|C|2385
4Y4O|1|2A|C|2386
4Y4O|1|2A|U|2387
4Y4O|1|2A|A|2388
4Y4O|1|2A|G|2389
4Y4O|1|2A|U|2390
4Y4O|1|2A|G|2391
4Y4O|1|2A|A|2392
4Y4O|1|2A|A|2393
4Y4O|1|2A|C|2394
4Y4O|1|2A|C|2395
*
4Y4O|1|2A|G|2421
4Y4O|1|2A|A|2422
4Y4O|1|2A|U|2423
4Y4O|1|2A|C|2424
4Y4O|1|2A|A|2425
4Y4O|1|2A|A|2426
4Y4O|1|2A|C|2427
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 20
- 50S ribosomal protein L27
- Chain 21
- 50S ribosomal protein L28
- Chain 26
- 50S ribosomal protein L33
- Chain 28
- 50S ribosomal protein L35
- Chain 2P
- 50S ribosomal protein L15
- Chain 2Z
- 50S ribosomal protein L25
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