J3_4Y4P_023

3D structure

PDB id

4Y4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

4Y4P|1|2A|A|2518, 4Y4P|1|2A|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4Y4P_023 not in the Motif Atlas

Geometric match to J3_8VTW_008

Geometric discrepancy: 0.0583

The information below is about J3_8VTW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.4

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

4Y4P|1|2A|C|2517
4Y4P|1|2A|A|2518
4Y4P|1|2A|U|2519
4Y4P|1|2A|C|2520
*
4Y4P|1|2A|G|2545
4Y4P|1|2A|U|2546
4Y4P|1|2A|U|2547
*
4Y4P|1|2A|A|2561
4Y4P|1|2A|U|2562
4Y4P|1|2A|U|2563
4Y4P|1|2A|A|2564
4Y4P|1|2A|A|2565
4Y4P|1|2A|A|2566
4Y4P|1|2A|G|2567

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2O

50S ribosomal protein L14