J3_4Y4P_030

3D structure

PDB id

4Y4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGC*GGAC*GGAG

Length

11 nucleotides

Bulged bases

4Y4P|1|2a|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4Y4P_030 not in the Motif Atlas

Homologous match to J3_4LFB_008

Geometric discrepancy: 0.1952

The information below is about J3_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82365.5

Basepair signature

cWW-F-cWW-cWW-F-F

Number of instances in this motif group

4

Unit IDs

4Y4P|1|2a|C|1116
4Y4P|1|2a|G|1117
4Y4P|1|2a|C|1118
*
4Y4P|1|2a|G|1155
4Y4P|1|2a|G|1156
4Y4P|1|2a|A|1157
4Y4P|1|2a|C|1158
*
4Y4P|1|2a|G|1181
4Y4P|1|2a|G|1182
4Y4P|1|2a|A|1183
4Y4P|1|2a|G|1184

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2i

30S ribosomal protein S9

Chain 2n

30S ribosomal protein S14 type Z