J3_4Y4P_037

3D structure

PDB id

4Y4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

4Y4P|1|1A|G|345

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4Y4P_037 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0552

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4Y4P|1|1A|C|321
4Y4P|1|1A|G|322
4Y4P|1|1A|A|323
4Y4P|1|1A|A|324
4Y4P|1|1A|G|325
*
4Y4P|1|1A|C|340
4Y4P|1|1A|G|341
4Y4P|1|1A|C|342
4Y4P|1|1A|C|343
4Y4P|1|1A|A|344
4Y4P|1|1A|G|345
4Y4P|1|1A|A|346
4Y4P|1|1A|G|347
4Y4P|1|1A|A|348
4Y4P|1|1A|G|349
*
4Y4P|1|1A|C|361
4Y4P|1|1A|G|362
4Y4P|1|1A|U|363
4Y4P|1|1A|A|364
4Y4P|1|1A|G|365

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1Y

50S ribosomal protein L24