J3_4Y4P_038

3D structure

PDB id

4Y4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

4Y4P|1|1A|A|1430

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4Y4P_038 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.0642

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

4Y4P|1|1A|G|1390
4Y4P|1|1A|C|1391
4Y4P|1|1A|G|1392
4Y4P|1|1A|G|1393
4Y4P|1|1A|G|1394
4Y4P|1|1A|A|1395
4Y4P|1|1A|C|1396
*
4Y4P|1|1A|G|1427
4Y4P|1|1A|G|1428
4Y4P|1|1A|C|1429
4Y4P|1|1A|A|1430
4Y4P|1|1A|G|1431
*
4Y4P|1|1A|C|1448
4Y4P|1|1A|C|1449

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1X

50S ribosomal protein L23