J3_4Y4P_051
3D structure
- PDB id
- 4Y4P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- CGC*GGACUGC*GAGGAAGGAG
- Length
- 20 nucleotides
- Bulged bases
- 4Y4P|1|1a|A|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4Y4P_051 not in the Motif Atlas
- Homologous match to J3_4LFB_018
- Geometric discrepancy: 0.1372
- The information below is about J3_4LFB_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
4Y4P|1|1a|C|1116
4Y4P|1|1a|G|1117
4Y4P|1|1a|C|1118
*
4Y4P|1|1a|G|1155
4Y4P|1|1a|G|1156
4Y4P|1|1a|A|1157
4Y4P|1|1a|C|1158
4Y4P|1|1a|U|1159
4Y4P|1|1a|G|1160
4Y4P|1|1a|C|1161
*
4Y4P|1|1a|G|1175
4Y4P|1|1a|A|1176
4Y4P|1|1a|G|1177
4Y4P|1|1a|G|1178
4Y4P|1|1a|A|1179
4Y4P|1|1a|A|1180
4Y4P|1|1a|G|1181
4Y4P|1|1a|G|1182
4Y4P|1|1a|A|1183
4Y4P|1|1a|G|1184
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1b
- 30S ribosomal protein S2
- Chain 1g
- 30S ribosomal protein S7
- Chain 1i
- 30S ribosomal protein S9
- Chain 1n
- 30S ribosomal protein S14 type Z
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