J3_4Y4P_053

3D structure

PDB id

4Y4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4Y4P|1|2A|U|504, 4Y4P|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4Y4P_053 not in the Motif Atlas

Geometric match to J3_8VTW_037

Geometric discrepancy: 0.0424

The information below is about J3_8VTW_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_91149.1

Basepair signature

cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW

Number of instances in this motif group

6

Unit IDs

4Y4P|1|2A|G|30
4Y4P|1|2A|C|31
*
4Y4P|1|2A|G|474
4Y4P|1|2A|U|475
4Y4P|1|2A|G|476
4Y4P|1|2A|A|477
4Y4P|1|2A|A|478
4Y4P|1|2A|A|479
4Y4P|1|2A|A|480
4Y4P|1|2A|G|481
4Y4P|1|2A|A|482
4Y4P|1|2A|A|483
4Y4P|1|2A|C|484
*
4Y4P|1|2A|G|496
4Y4P|1|2A|A|497
4Y4P|1|2A|G|498
4Y4P|1|2A|U|499
4Y4P|1|2A|G|500
4Y4P|1|2A|A|501
4Y4P|1|2A|A|502
4Y4P|1|2A|A|503
4Y4P|1|2A|U|504
4Y4P|1|2A|A|505
4Y4P|1|2A|G|506
4Y4P|1|2A|A|507
4Y4P|1|2A|G|508
4Y4P|1|2A|C|509
4Y4P|1|2A|C|510

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2U

50S ribosomal protein L20

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24