J3_4Y4P_055

3D structure

PDB id

4Y4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

AC*GAUAAGC*GAUGU

Length

14 nucleotides

Bulged bases

4Y4P|1|2A|U|72, 4Y4P|1|2A|A|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4Y4P_055 not in the Motif Atlas

Geometric match to J3_8VTW_039

Geometric discrepancy: 0.0695

The information below is about J3_8VTW_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_38265.2

Basepair signature

cWW-F-cWW-F-cWW-F-cWW-F

Number of instances in this motif group

8

Unit IDs

4Y4P|1|2A|A|56
4Y4P|1|2A|C|57
*
4Y4P|1|2A|G|70
4Y4P|1|2A|A|71
4Y4P|1|2A|U|72
4Y4P|1|2A|A|73
4Y4P|1|2A|A|74
4Y4P|1|2A|G|75
4Y4P|1|2A|C|76
*
4Y4P|1|2A|G|110
4Y4P|1|2A|A|111
4Y4P|1|2A|U|112
4Y4P|1|2A|G|113
4Y4P|1|2A|U|114

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 22

50S ribosomal protein L29

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23