Motif J3_38265.2 Version J3_38265.2 of this group appears in releases 3.90 to 3.90

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8		9		10	break		11		12	1-2	1-12	4-7	5-6	10-11
1	J3_8C3A_060	8C3A	0.1637	2	4	5.8S rRNA	G	58	A	59	A	61	G	63	U	64	*	A	96	A	97	U	98	C	99	U	100	*	A	44	C	45	ncSs	cWW	cWW	cWW	cWW
2	J3_8P4V_024	8P4V	0.1346	2	4	5.8S rRNA	G	58	A	59	A	61	G	63	U	64	*	A	96	A	97	U	98	C	99	U	100	*	A	44	C	45	ncSs	cWW	cWW	cWW	cWW
3	J3_5TBW_071	5TBW	0.1234	2	4	5.8S rRNA	G	58	A	59	A	61	G	63	U	64	*	A	96	A	97	U	98	C	99	U	100	*	A	44	C	45	ncSs	cWW	cWW	cWW	cWW
4	J3_5J7L_037	5J7L	0.0571	2	DA	LSU rRNA	G	70	A	71	A	73	G	75	C	76	*	G	110	A	111	U	112	U	113	U	114	*	A	56	C	57	ncSs	cWW	cWW	cWW	cWW
5	J3_4V9F_014	4V9F	0.0000	2	0	LSU rRNA	G	66	A	67	A	69	G	71	C	72	*	G	105	A	106	U	107	U	108	U	109	*	A	52	C	53	ncSs	cWW	cWW	cWW	cWW
6	J3_8VTW_039	8VTW	0.0759	2	1A	LSU rRNA	G	70	A	71	A	73	G	75	C	76	*	G	110	A	111	U	112	G	113	U	114	*	A	56	C	57	ncSs	cWW	cWW	cWW	cWW
7	J3_7A0S_002	7A0S	0.1461	2	X	LSU rRNA	G	69	A	70	A	72	G	74	C	75	*	G	108	A	109	U	110	G	111	U	112	*	A	55	C	56		cWW	ncWW	cWW	cWW
8	J3_4WF9_013	4WF9	0.1671	2	X	LSU rRNA	G	70	A	71	A	73	G	75	C	76	*	G	109	A	110	U	111	U	112	U	113	*	A	56	C	57	cSH	cWW	cWW	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
ACGAUACGUAAUCU	3
ACGAUAAGCGAUUU	2
ACGAUAAGCGAUGU	1
ACGAAAAGCGAUGU	1
ACGAUAUGCGAUUU	1

Non-Watson-Crick part of the motif

Sequence	Counts
AUACGAUC	3
AUAAGAUU	2
AUAAGAUG	1
AAAAGAUG	1
AUAUGAUU	1

Release history

Release	3.90
Date	2024-11-06
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (8)
Basepair signature: cWW-F-cWW-F-cWW-F-cWW-F
Heat map statistics: Min 0.05 | Avg 0.13 | Max 0.29

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