J3_4Y4P_062
3D structure
- PDB id
- 4Y4P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- CCAUAG*CG*UCG
- Length
- 11 nucleotides
- Bulged bases
- 4Y4P|1|2B|U|14, 4Y4P|1|2B|C|109
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4Y4P_062 not in the Motif Atlas
- Homologous match to J3_9DFE_020
- Geometric discrepancy: 0.1529
- The information below is about J3_9DFE_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_12003.2
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
4Y4P|1|2B|C|11
4Y4P|1|2B|C|12
4Y4P|1|2B|A|13
4Y4P|1|2B|U|14
4Y4P|1|2B|A|15
4Y4P|1|2B|G|16
*
4Y4P|1|2B|C|68
4Y4P|1|2B|G|69
*
4Y4P|1|2B|U|108
4Y4P|1|2B|C|109
4Y4P|1|2B|G|110
Current chains
- Chain 2B
- 5S Ribosomal RNA
Nearby chains
- Chain 20
- 50S ribosomal protein L27
- Chain 2A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2S
- 50S ribosomal protein L18
- Chain 2Z
- 50S ribosomal protein L25
Coloring options: