J3_4YBB_011
3D structure
- PDB id
- 4YBB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution structure of the Escherichia coli ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.1 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 4YBB|1|BA|A|975, 4YBB|1|BA|G|976, 4YBB|1|BA|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4YBB_011 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.0725
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4YBB|1|BA|U|955
4YBB|1|BA|U|956
4YBB|1|BA|U|957
4YBB|1|BA|A|958
4YBB|1|BA|A|959
4YBB|1|BA|U|960
4YBB|1|BA|U|961
4YBB|1|BA|C|962
*
4YBB|1|BA|G|973
4YBB|1|BA|A|974
4YBB|1|BA|A|975
4YBB|1|BA|G|976
4YBB|1|BA|A|977
4YBB|1|BA|A|978
4YBB|1|BA|C|979
4YBB|1|BA|C|980
4YBB|1|BA|U|981
4YBB|1|BA|U|982
4YBB|1|BA|A|983
4YBB|1|BA|C|984
*
4YBB|1|BA|G|1221
4YBB|1|BA|G|1222
4YBB|1|BA|C|1223
4YBB|1|BA|U|1224
4YBB|1|BA|A|1225
Current chains
- Chain BA
- 16S rRNA
Nearby chains
- Chain BJ
- 30S ribosomal protein S10
- Chain BM
- 30S ribosomal protein S13
- Chain BN
- 30S ribosomal protein S14
- Chain BS
- 30S ribosomal protein S19
Coloring options: