J3_4YBB_020

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

4YBB|1|CA|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4YBB_020 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.1178

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

4YBB|1|CA|C|1306
4YBB|1|CA|A|1307
4YBB|1|CA|A|1308
4YBB|1|CA|G|1309
*
4YBB|1|CA|C|1605
4YBB|1|CA|C|1606
4YBB|1|CA|C|1607
4YBB|1|CA|A|1608
4YBB|1|CA|A|1609
4YBB|1|CA|A|1610
4YBB|1|CA|C|1611
*
4YBB|1|CA|G|1620
4YBB|1|CA|U|1621
4YBB|1|CA|G|1622

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C3

50S ribosomal protein L34