J3_4YBB_034
3D structure
- PDB id
- 4YBB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution structure of the Escherichia coli ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.1 Å
Loop
- Sequence
- GAAC*GUUGAU*AAUGAAC
- Length
- 17 nucleotides
- Bulged bases
- 4YBB|1|DA|U|2833, 4YBB|1|DA|A|2835, 4YBB|1|DA|U|2884||A, 4YBB|1|DA|G|2885||A
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4YBB_034 not in the Motif Atlas
- Homologous match to J3_5J7L_048
- Geometric discrepancy: 0.1109
- The information below is about J3_5J7L_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64069.1
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
4YBB|1|DA|G|2812
4YBB|1|DA|A|2813
4YBB|1|DA|A|2814
4YBB|1|DA|C|2815
*
4YBB|1|DA|G|2831
4YBB|1|DA|U|2832
4YBB|1|DA|U|2833
4YBB|1|DA|G|2834
4YBB|1|DA|A|2835
4YBB|1|DA|U|2836
*
4YBB|1|DA|A|2882
4YBB|1|DA|A|2883
4YBB|1|DA|U|2884||A
4YBB|1|DA|G|2885||A
4YBB|1|DA|A|2886||A
4YBB|1|DA|A|2887||A
4YBB|1|DA|C|2888||A
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain D1
- 50S ribosomal protein L32
- Chain DD
- 50S ribosomal protein L3
- Chain DO
- 50S ribosomal protein L17
- Chain DT
- 50S ribosomal protein L22
Coloring options: