J3_4YBB_049

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4YBB_049 not in the Motif Atlas

Homologous match to J3_5J7L_052

Geometric discrepancy: 0.0756

The information below is about J3_5J7L_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

4YBB|1|BA|C|936
4YBB|1|BA|A|937
4YBB|1|BA|A|938
4YBB|1|BA|G|939
*
4YBB|1|BA|C|1344
4YBB|1|BA|U|1345
4YBB|1|BA|A|1346
4YBB|1|BA|G|1347
4YBB|1|BA|U|1348
4YBB|1|BA|A|1349
4YBB|1|BA|A|1350
*
4YBB|1|BA|U|1372
4YBB|1|BA|G|1373
4YBB|1|BA|A|1374
4YBB|1|BA|A|1375
4YBB|1|BA|U|1376
4YBB|1|BA|A|1377
4YBB|1|BA|C|1378
4YBB|1|BA|G|1379

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BG

30S ribosomal protein S7

Chain BI

30S ribosomal protein S9