J3_4YBB_054

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4YBB_054 not in the Motif Atlas

Geometric match to J3_5J7L_036

Geometric discrepancy: 0.075

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

4YBB|1|CA|G|30
4YBB|1|CA|C|31
*
4YBB|1|CA|G|474
4YBB|1|CA|C|475
4YBB|1|CA|G|476
4YBB|1|CA|A|477
4YBB|1|CA|A|478
4YBB|1|CA|A|479
4YBB|1|CA|A|480
4YBB|1|CA|G|481
*
4YBB|1|CA|C|509
4YBB|1|CA|C|510

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CR

50S ribosomal protein L20

Chain CV

50S ribosomal protein L24