J3_4YPB_005
3D structure
- PDB id
- 4YPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CUUG*CAG*CUUACG
- Length
- 13 nucleotides
- Bulged bases
- 4YPB|1|QA|U|1212, 4YPB|1|QA|C|1214
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4YPB_005 not in the Motif Atlas
- Geometric match to J3_4LFB_005
- Geometric discrepancy: 0.1785
- The information below is about J3_4LFB_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82572.1
- Basepair signature
- cWW-tSH-tWW-F-cWW-tHW-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
4YPB|1|QA|C|990
4YPB|1|QA|U|991
4YPB|1|QA|U|992
4YPB|1|QA|G|993
*
4YPB|1|QA|C|1045
4YPB|1|QA|A|1046
4YPB|1|QA|G|1047
*
4YPB|1|QA|C|1210
4YPB|1|QA|U|1211
4YPB|1|QA|U|1212
4YPB|1|QA|A|1213
4YPB|1|QA|C|1214
4YPB|1|QA|G|1215
Current chains
- Chain QA
- 16S rRNA
Nearby chains
- Chain QN
- 30S ribosomal protein S14
- Chain QY
- Host inhibition of growth B
- Chain YA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: