J3_4YPB_013

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4YPB_013 not in the Motif Atlas

Homologous match to J3_7RQB_007

Geometric discrepancy: 0.077

The information below is about J3_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.3

Basepair signature

cWW-tSH-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

4YPB|1|RA|C|1298
4YPB|1|RA|G|1299
4YPB|1|RA|U|1300
4YPB|1|RA|A|1301
4YPB|1|RA|A|1302
4YPB|1|RA|G|1303
*
4YPB|1|RA|C|1625
4YPB|1|RA|G|1626
4YPB|1|RA|G|1627
*
4YPB|1|RA|U|1639
4YPB|1|RA|C|1640
4YPB|1|RA|A|1641
4YPB|1|RA|G|1642

Current chains

Chain RA

23S rRNA

Nearby chains