3D structure

PDB id
4YPB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
GCGGGAC*GGCAG*CC
Length
14 nucleotides
Bulged bases
4YPB|1|YA|A|1384
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4YPB_071 not in the Motif Atlas
Homologous match to J3_9DFE_012
Geometric discrepancy: 0.0992
The information below is about J3_9DFE_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_31965.2
Basepair signature
cWW-F-cWW-F-F-F-F-F-cWW-F
Number of instances in this motif group
6

Unit IDs

4YPB|1|YA|G|1344
4YPB|1|YA|C|1345
4YPB|1|YA|G|1346
4YPB|1|YA|G|1347
4YPB|1|YA|G|1348
4YPB|1|YA|A|1349
4YPB|1|YA|C|1350
*
4YPB|1|YA|G|1381
4YPB|1|YA|G|1382
4YPB|1|YA|C|1383
4YPB|1|YA|A|1384
4YPB|1|YA|G|1385
*
4YPB|1|YA|C|1402
4YPB|1|YA|C|1403

Current chains

Chain YA
23S rRNA

Nearby chains

Chain Y7
50S ribosomal protein L34
Chain YX
50S ribosomal protein L23

Coloring options:


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