J3_4YPB_071
3D structure
- PDB id
- 4YPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GCGGGAC*GGCAG*CC
- Length
- 14 nucleotides
- Bulged bases
- 4YPB|1|YA|A|1384
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4YPB_071 not in the Motif Atlas
- Homologous match to J3_9DFE_012
- Geometric discrepancy: 0.0992
- The information below is about J3_9DFE_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_31965.2
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
4YPB|1|YA|G|1344
4YPB|1|YA|C|1345
4YPB|1|YA|G|1346
4YPB|1|YA|G|1347
4YPB|1|YA|G|1348
4YPB|1|YA|A|1349
4YPB|1|YA|C|1350
*
4YPB|1|YA|G|1381
4YPB|1|YA|G|1382
4YPB|1|YA|C|1383
4YPB|1|YA|A|1384
4YPB|1|YA|G|1385
*
4YPB|1|YA|C|1402
4YPB|1|YA|C|1403
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y7
- 50S ribosomal protein L34
- Chain YX
- 50S ribosomal protein L23
Coloring options: