3D structure

PDB id
4YY3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
30S ribosomal subunit- HigB complex
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
CAAUG*CCCAGUUC*GCCG
Length
17 nucleotides
Bulged bases
4YY3|1|A|U|1240, 4YY3|1|A|U|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4YY3_013 not in the Motif Atlas
Homologous match to J3_4LFB_009
Geometric discrepancy: 0.074
The information below is about J3_4LFB_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.6
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

4YY3|1|A|C|1237
4YY3|1|A|A|1238
4YY3|1|A|A|1239
4YY3|1|A|U|1240
4YY3|1|A|G|1241
*
4YY3|1|A|C|1296
4YY3|1|A|C|1297
4YY3|1|A|C|1298
4YY3|1|A|A|1299
4YY3|1|A|G|1300
4YY3|1|A|U|1301
4YY3|1|A|U|1302
4YY3|1|A|C|1303
*
4YY3|1|A|G|1334
4YY3|1|A|C|1335
4YY3|1|A|C|1336
4YY3|1|A|G|1337

Current chains

Chain A
16S rRNA

Nearby chains

Chain G
30S ribosomal protein S7
Chain M
30S ribosomal protein S13
Chain V
30S ribosomal protein Thx

Coloring options:


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