J3_4YZV_017

3D structure

PDB id

4YZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

4YZV|1|RA|A|2518, 4YZV|1|RA|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4YZV_017 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.0569

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

4YZV|1|RA|C|2517
4YZV|1|RA|A|2518
4YZV|1|RA|U|2519
4YZV|1|RA|C|2520
*
4YZV|1|RA|G|2545
4YZV|1|RA|U|2546
4YZV|1|RA|U|2547
*
4YZV|1|RA|A|2561
4YZV|1|RA|U|2562
4YZV|1|RA|U|2563
4YZV|1|RA|A|2564
4YZV|1|RA|A|2565
4YZV|1|RA|A|2566
4YZV|1|RA|G|2567

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RN

50S ribosomal protein L13

Chain RO

50S ribosomal protein L14