J3_4YZV_028
3D structure
- PDB id
- 4YZV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAGCUA*UAG*CGAG
- Length
- 14 nucleotides
- Bulged bases
- 4YZV|1|YA|G|686, 4YZV|1|YA|G|792
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4YZV_028 not in the Motif Atlas
- Homologous match to J3_7RQB_004
- Geometric discrepancy: 0.051
- The information below is about J3_7RQB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.4
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
4YZV|1|YA|C|683
4YZV|1|YA|G|684
4YZV|1|YA|A|685
4YZV|1|YA|G|686
4YZV|1|YA|C|687
4YZV|1|YA|U|688
4YZV|1|YA|A|689
*
4YZV|1|YA|U|773
4YZV|1|YA|A|774
4YZV|1|YA|G|775
*
4YZV|1|YA|C|791
4YZV|1|YA|G|792
4YZV|1|YA|A|793
4YZV|1|YA|G|794
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y7
- 50S ribosomal protein L34
- Chain YD
- 50S ribosomal protein L2
Coloring options: