J3_4YZV_038

3D structure

PDB id

4YZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GC*GGAAUCU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4YZV_038 not in the Motif Atlas

Geometric match to J3_4LFB_010

Geometric discrepancy: 0.0677

The information below is about J3_4LFB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.1

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4YZV|1|QA|G|46
4YZV|1|QA|C|47
*
4YZV|1|QA|G|361
4YZV|1|QA|G|362
4YZV|1|QA|A|363
4YZV|1|QA|A|364
4YZV|1|QA|U|365
4YZV|1|QA|C|366
4YZV|1|QA|U|367
*
4YZV|1|QA|A|393
4YZV|1|QA|G|394
4YZV|1|QA|C|395

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12

Chain QP

30S ribosomal protein S16

Chain YI

50S ribosomal protein L9