J3_4YZV_040
3D structure
- PDB id
- 4YZV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGG*CUAG*CG
- Length
- 9 nucleotides
- Bulged bases
- 4YZV|1|QA|A|653
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4YZV_040 not in the Motif Atlas
- Geometric match to J3_4LFB_011
- Geometric discrepancy: 0.107
- The information below is about J3_4LFB_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01633.1
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
4YZV|1|QA|C|586
4YZV|1|QA|G|587
4YZV|1|QA|G|588
*
4YZV|1|QA|C|651
4YZV|1|QA|U|652
4YZV|1|QA|A|653
4YZV|1|QA|G|654
*
4YZV|1|QA|C|754
4YZV|1|QA|G|755
Current chains
- Chain QA
- 16S rRNA
Nearby chains
- Chain QH
- 30S ribosomal protein S8
- Chain QL
- 30S ribosomal protein S12
- Chain QO
- 30S ribosomal protein S15
- Chain QQ
- 30S ribosomal protein S17
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