J3_4YZV_042
3D structure
- PDB id
- 4YZV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UG*CGCCGAUGG*CAG
- Length
- 14 nucleotides
- Bulged bases
- 4YZV|1|QA|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4YZV_042 not in the Motif Atlas
- Homologous match to J3_6CZR_017
- Geometric discrepancy: 0.1347
- The information below is about J3_6CZR_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.3
- Basepair signature
- cWW-F-cWW-F-F-tWW-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
4YZV|1|QA|U|672
4YZV|1|QA|G|673
*
4YZV|1|QA|C|717
4YZV|1|QA|G|718
4YZV|1|QA|C|719
4YZV|1|QA|C|720
4YZV|1|QA|G|721
4YZV|1|QA|A|722
4YZV|1|QA|U|723
4YZV|1|QA|G|724
4YZV|1|QA|G|725
*
4YZV|1|QA|C|732
4YZV|1|QA|A|733
4YZV|1|QA|G|734
Current chains
- Chain QA
- 16S rRNA
Nearby chains
- Chain QF
- 30S ribosomal protein S6
- Chain QK
- 30S ribosomal protein S11
- Chain QO
- 30S ribosomal protein S15
- Chain QR
- 30S ribosomal protein S18
- Chain QX
- messenger RNA
- Chain RD
- 50S ribosomal protein L2
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