J3_4YZV_051

3D structure

PDB id

4YZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

4YZV|1|RA|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4YZV_051 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.1066

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

4YZV|1|RA|G|1344
4YZV|1|RA|C|1345
4YZV|1|RA|G|1346
4YZV|1|RA|G|1347
4YZV|1|RA|G|1348
4YZV|1|RA|A|1349
4YZV|1|RA|C|1350
*
4YZV|1|RA|G|1381
4YZV|1|RA|G|1382
4YZV|1|RA|C|1383
4YZV|1|RA|A|1384
4YZV|1|RA|G|1385
*
4YZV|1|RA|C|1402
4YZV|1|RA|C|1403

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RX

50S ribosomal protein L23