J3_4YZV_067
3D structure
- PDB id
- 4YZV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUCG*CGAUAGCGCACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 4YZV|1|YA|C|34, 4YZV|1|YA|U|448, 4YZV|1|YA|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4YZV_067 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.072
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
4YZV|1|YA|C|32
4YZV|1|YA|U|33
4YZV|1|YA|C|34
4YZV|1|YA|G|35
*
4YZV|1|YA|C|445
4YZV|1|YA|G|446
4YZV|1|YA|A|447
4YZV|1|YA|U|448
4YZV|1|YA|A|449
4YZV|1|YA|G|450
4YZV|1|YA|C|451
4YZV|1|YA|G|452
4YZV|1|YA|C|453
4YZV|1|YA|A|454
4YZV|1|YA|C|455
4YZV|1|YA|C|456
4YZV|1|YA|A|457
4YZV|1|YA|G|458
4YZV|1|YA|U|459
4YZV|1|YA|A|460
4YZV|1|YA|C|461
*
4YZV|1|YA|G|468
4YZV|1|YA|G|469
4YZV|1|YA|A|470
4YZV|1|YA|A|471
4YZV|1|YA|A|472
4YZV|1|YA|G|473
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y7
- 50S ribosomal protein L34
- Chain YF
- 50S ribosomal protein L4
- Chain YU
- 50S ribosomal protein L20
- Chain YX
- 50S ribosomal protein L23
Coloring options: