J3_4Z3S_060

3D structure

PDB id

4Z3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

4Z3S|1|2A|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4Z3S_060 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.0722

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

4Z3S|1|2A|G|1344
4Z3S|1|2A|C|1345
4Z3S|1|2A|G|1346
4Z3S|1|2A|G|1347
4Z3S|1|2A|G|1348
4Z3S|1|2A|A|1349
4Z3S|1|2A|C|1350
*
4Z3S|1|2A|G|1381
4Z3S|1|2A|G|1382
4Z3S|1|2A|C|1383
4Z3S|1|2A|A|1384
4Z3S|1|2A|G|1385
*
4Z3S|1|2A|C|1402
4Z3S|1|2A|C|1403

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2X

50S ribosomal protein L23