J3_4Z3S_067

3D structure

PDB id

4Z3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

4Z3S|1|2a|C|48, 4Z3S|1|2a|A|50, 4Z3S|1|2a|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4Z3S_067 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.0677

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4Z3S|1|2a|G|46
4Z3S|1|2a|C|47
4Z3S|1|2a|C|48
4Z3S|1|2a|U|49
4Z3S|1|2a|A|50
4Z3S|1|2a|A|51
4Z3S|1|2a|G|52
*
4Z3S|1|2a|U|359
4Z3S|1|2a|A|360
4Z3S|1|2a|G|361
4Z3S|1|2a|G|362
4Z3S|1|2a|A|363
4Z3S|1|2a|A|364
4Z3S|1|2a|U|365
4Z3S|1|2a|C|366
4Z3S|1|2a|U|367
*
4Z3S|1|2a|A|393
4Z3S|1|2a|G|394
4Z3S|1|2a|C|395

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12

Chain 2p

30S ribosomal protein S16