J3_4Z3S_074

3D structure

PDB id

4Z3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

CGC*GGACUGC*GAGGAAGGAG

Length

20 nucleotides

Bulged bases

4Z3S|1|2a|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4Z3S_074 not in the Motif Atlas

Homologous match to J3_4LFB_018

Geometric discrepancy: 0.1382

The information below is about J3_4LFB_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17791.2

Basepair signature

cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4Z3S|1|2a|C|1116
4Z3S|1|2a|G|1117
4Z3S|1|2a|C|1118
*
4Z3S|1|2a|G|1155
4Z3S|1|2a|G|1156
4Z3S|1|2a|A|1157
4Z3S|1|2a|C|1158
4Z3S|1|2a|U|1159
4Z3S|1|2a|G|1160
4Z3S|1|2a|C|1161
*
4Z3S|1|2a|G|1175
4Z3S|1|2a|A|1176
4Z3S|1|2a|G|1177
4Z3S|1|2a|G|1178
4Z3S|1|2a|A|1179
4Z3S|1|2a|A|1180
4Z3S|1|2a|G|1181
4Z3S|1|2a|G|1182
4Z3S|1|2a|A|1183
4Z3S|1|2a|G|1184

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2i

30S ribosomal protein S9

Chain 2n

30S ribosomal protein S14 type Z