J3_4Z8C_009
3D structure
- PDB id
- 4Z8C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4Z8C_009 not in the Motif Atlas
- Homologous match to J3_4LFB_002
- Geometric discrepancy: 0.0594
- The information below is about J3_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.4
- Basepair signature
- cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
- Number of instances in this motif group
- 4
Unit IDs
4Z8C|1|1a|C|914
4Z8C|1|1a|A|915
4Z8C|1|1a|A|916
4Z8C|1|1a|G|917
*
4Z8C|1|1a|C|1326
4Z8C|1|1a|U|1327
4Z8C|1|1a|A|1328
4Z8C|1|1a|G|1329
4Z8C|1|1a|U|1330
4Z8C|1|1a|A|1331
4Z8C|1|1a|A|1332
*
4Z8C|1|1a|U|1355
4Z8C|1|1a|G|1356
4Z8C|1|1a|A|1357
4Z8C|1|1a|A|1358
4Z8C|1|1a|U|1359
4Z8C|1|1a|A|1360
4Z8C|1|1a|C|1361
4Z8C|1|1a|G|1362
Current chains
- Chain 1a
- 16S ribosomal RNA
Nearby chains
- Chain 1g
- 30S ribosomal protein S7
- Chain 1i
- 30S ribosomal protein S9
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