J3_4Z8C_014
3D structure
- PDB id
- 4Z8C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CGC*GGACUGC*GAGGAAGGAG
- Length
- 20 nucleotides
- Bulged bases
- 4Z8C|1|1a|A|1165
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4Z8C_014 not in the Motif Atlas
- Homologous match to J3_4LFB_018
- Geometric discrepancy: 0.132
- The information below is about J3_4LFB_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
4Z8C|1|1a|C|1099
4Z8C|1|1a|G|1100
4Z8C|1|1a|C|1101
*
4Z8C|1|1a|G|1138
4Z8C|1|1a|G|1139
4Z8C|1|1a|A|1140
4Z8C|1|1a|C|1141
4Z8C|1|1a|U|1142
4Z8C|1|1a|G|1143
4Z8C|1|1a|C|1144
*
4Z8C|1|1a|G|1157
4Z8C|1|1a|A|1158
4Z8C|1|1a|G|1159
4Z8C|1|1a|G|1160
4Z8C|1|1a|A|1161
4Z8C|1|1a|A|1162
4Z8C|1|1a|G|1163
4Z8C|1|1a|G|1164
4Z8C|1|1a|A|1165
4Z8C|1|1a|G|1166
Current chains
- Chain 1a
- 16S ribosomal RNA
Nearby chains
- Chain 1b
- 30S ribosomal protein S2
- Chain 1i
- 30S ribosomal protein S9
- Chain 1j
- 30S ribosomal protein S10
- Chain 1n
- 30S ribosomal protein S14 type Z
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